CDS

Accession Number TCMCG057C51875
gbkey CDS
Protein Id XP_018456299.1
Location join(36060189..36060207,36060303..36060680,36060855..36061232,36061331..36061519,36061603..36062489,36062551..36062690,36062775..36062913,36063038..36063154,36063265..36063418,36063543..36063587,36063686..36064266)
Gene LOC108827407
GeneID 108827407
Organism Raphanus sativus

Protein

Length 1008aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018600797.1
Definition PREDICTED: nuclear pore complex protein NUP98B-like [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category UY
Description Nuclear pore complex protein
KEGG_TC 1.I.1
KEGG_Module M00427        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K14297        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03013        [VIEW IN KEGG]
ko05164        [VIEW IN KEGG]
map03013        [VIEW IN KEGG]
map05164        [VIEW IN KEGG]
GOs GO:0000972        [VIEW IN EMBL-EBI]
GO:0000973        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003682        [VIEW IN EMBL-EBI]
GO:0003712        [VIEW IN EMBL-EBI]
GO:0003713        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005048        [VIEW IN EMBL-EBI]
GO:0005198        [VIEW IN EMBL-EBI]
GO:0005215        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005635        [VIEW IN EMBL-EBI]
GO:0005643        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006260        [VIEW IN EMBL-EBI]
GO:0006403        [VIEW IN EMBL-EBI]
GO:0006405        [VIEW IN EMBL-EBI]
GO:0006406        [VIEW IN EMBL-EBI]
GO:0006606        [VIEW IN EMBL-EBI]
GO:0006611        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006810        [VIEW IN EMBL-EBI]
GO:0006886        [VIEW IN EMBL-EBI]
GO:0006913        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0006997        [VIEW IN EMBL-EBI]
GO:0006999        [VIEW IN EMBL-EBI]
GO:0008104        [VIEW IN EMBL-EBI]
GO:0008139        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0015031        [VIEW IN EMBL-EBI]
GO:0015833        [VIEW IN EMBL-EBI]
GO:0015931        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016032        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016234        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0017038        [VIEW IN EMBL-EBI]
GO:0017056        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0031080        [VIEW IN EMBL-EBI]
GO:0031090        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031503        [VIEW IN EMBL-EBI]
GO:0031965        [VIEW IN EMBL-EBI]
GO:0031967        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031975        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033036        [VIEW IN EMBL-EBI]
GO:0033120        [VIEW IN EMBL-EBI]
GO:0033218        [VIEW IN EMBL-EBI]
GO:0033365        [VIEW IN EMBL-EBI]
GO:0034397        [VIEW IN EMBL-EBI]
GO:0034398        [VIEW IN EMBL-EBI]
GO:0034399        [VIEW IN EMBL-EBI]
GO:0034504        [VIEW IN EMBL-EBI]
GO:0034613        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0042277        [VIEW IN EMBL-EBI]
GO:0042405        [VIEW IN EMBL-EBI]
GO:0042886        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043484        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044403        [VIEW IN EMBL-EBI]
GO:0044419        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044614        [VIEW IN EMBL-EBI]
GO:0044615        [VIEW IN EMBL-EBI]
GO:0045184        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046907        [VIEW IN EMBL-EBI]
GO:0046931        [VIEW IN EMBL-EBI]
GO:0048024        [VIEW IN EMBL-EBI]
GO:0048026        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0050000        [VIEW IN EMBL-EBI]
GO:0050657        [VIEW IN EMBL-EBI]
GO:0050658        [VIEW IN EMBL-EBI]
GO:0050684        [VIEW IN EMBL-EBI]
GO:0050685        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051028        [VIEW IN EMBL-EBI]
GO:0051168        [VIEW IN EMBL-EBI]
GO:0051169        [VIEW IN EMBL-EBI]
GO:0051170        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051179        [VIEW IN EMBL-EBI]
GO:0051234        [VIEW IN EMBL-EBI]
GO:0051236        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051292        [VIEW IN EMBL-EBI]
GO:0051640        [VIEW IN EMBL-EBI]
GO:0051641        [VIEW IN EMBL-EBI]
GO:0051649        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070727        [VIEW IN EMBL-EBI]
GO:0071166        [VIEW IN EMBL-EBI]
GO:0071426        [VIEW IN EMBL-EBI]
GO:0071427        [VIEW IN EMBL-EBI]
GO:0071702        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071705        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0072594        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0140110        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903311        [VIEW IN EMBL-EBI]
GO:1903313        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:1990841        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTTTGGTGCATCTAATCCTTTTGGACAGGGATCTAACAGCAGCAGTCCTTTTGGGACCCAAACTCAATCTGTGTTTGGTCAGAACAACAACAACGCGGCTAGTAATAATCCCTTTGCTCCGAAGCCTTTTGGTGCTTCTAGTCCTTTTGGTGCGCAGAGTGGTGGTTCTATGTTTGGGGGCACTTCAACCGGTGTGTTTGGTCAGAATCAAGCTTCTAGTCCTTTCGGCGCGCAGACTGGTGGTTCTATGTTTGGAGGCACTTCAACAGGTGTGTTTGGGCAGAATCAAGCTTCTAGTCCTTTTGGTGCTTCATCACAAGGGTTTGGGAGCTCTACTCCGAGCTTTGGAGCACCTTCTGCTCCTGCCTTTGGCAACTCGCCTTCACCTTTCGGTGGCACTTCAACTTTTGGACAGAATGGCTTCTCAACGCCTCAGTCAAGTCCTTTCGGAAACACCACACAACAATCACAGCCTGCTTTTGGAAACAGCACTTTTGGGTCATCTTCACCCTTTGGTGCCTCTACCACCCCTACCTTCGGGTCCACAAATACATCTCCCTTCGGCGCCTCAAGCTCACCTGCGTTTGGCGCGGCACCCACTCCTGCCTTTGGTAACTCTGGCAGTGCATTTGGCAACAATGCTTTTAGTTCTCCTGCGTCTGCGTTTGGTGCTTCAAGCTCTCCTGCGTTTGGTGTTTCAAGCTCTTCTGCGTTTGGTGTTGGCTCCTCCCCAGCTTTCGGACAGTCTATGCAATCTTCCTTTGGAGCTCAAGGTTCTCAGGCTTCGACCTCAACCTTTGGGAATCAACAAGGCGGTAGTAGGGTCATGCCTTATGCATCTACAATAGAGGCAGATGCTGGAACTAACCCTGGGAAGCTACAGTCTATATCTGCCATGACTGTCCACAAAAATAAATGCCATGAGGAGCTTAGGTGGGAGGATTACCAGCGAGGAGACAAAGGTGGAAAACTTCCTGCTGGTCAAACTAGTGTGTTCTCTCAGACGCCCACAAGTCCTTTCGGCCAGACACCTGCAAATCAAACAAACCCCTTCCAAAGCACAATAGCCGCAAACCCAAGTCCTTTCGGCCAGACACCTGCAAATCAAACAAACCCCTTTCAAAGCACAATAGCCCCAAACCCAAGTCCTTTCGGCCAGACACCTGCAAATCAAACAAACCCCTTTCAAAGCACAATAGCCCCAAACCCAAGTCCTTTCGGCCAGCCATCCACAAATCAAACAAACCCCTTTCAAAGCACAATAGCCACAAACCCAAGTCCTTTCGGCCAGCCATCTGCAAACCAAACAAACACCTTTCAAAGCACAATATCCCCAAGTCCGTTCGGCCAGCCATCTGCGAACCCTACAAACACCTTTCAAAGCACACCAAACCTTTTCAGCCAGAACACTCCAGCAACTAACACAAATTTTTCGTCTCCCTTTGGCCAACCTACTGCTCCATCCTTGTTTGGAACTTCATCAAATACCACATCCGGTTTTGGAACATCCTCTGGTTTTGCAACAAACACAACACAGCCATTTAATCCATCAAGCACTCCTTCAATTGCCTCTTCGTCAGCCTTCAGTCAATTTGGCTCCTCTCCGTCTCTGTTTAGTTCGAGTCCTGCACAAGGGTCAACTCCAGCATTTAGCAGTGGAAACTTTAACAACAGTCAGTCAGCTCCGCTGTTTAGCTCAAATCCCTCATTTGCACAGACTAGTTCTGGGTTTACACTGAATACAAATACCCAACCTAGCATTTTCAGTACACCTTCCACTGGATTCCCGAACATGTCTACAAGCTCTCCATCCTTTAATACAAGCATCTCTCCCTTTAGTCAAACAAAGGCTGTTGGTTTGACACCCCAACAATCAACTCAGCCAGCTCAACCATCTATTAGTTTTAACAACTCTGGTCAGACCCAAGCAACTCAACCATCCTTTAGCTTCAACAACTCTGGTCAGACCCAAGCAGGTGCCTTTCAAGTGCCTGCCATGGCTAACCCCACTCCTACGCAACCAAACCCTGTTGCAAGCCCATTTGGAACGCTTCCTGCTTTGCCACAGGTTTCAATCGGTCAAGGTGGAAATTCACCTTCGATTCAGTATGGAATCTCCAGCTTGCCTGTCGTTGATAGACCTGCACCGGCCAGAGTATCACCACTCATGACTTCTCGACACCTTTTGCAAAGACGGGTCATGCTGCCTGCAAGAAAGTACCGTCCTGGGGATGATAGTCCAAAGGTTCCATTCTTCATGGATGAAGAGAACTTCAATACACCTAAGGCCGATGCGTCTTTCACTCCAAGGCAAAACCCAAGAGCTTTGTTTATACGCTCATTTAAAAAGGAAACAGCAGCACCGCTGAAGGATGAGACGACCCCGCTGCAGGAGAATGGTAAGAGATCGAATGGGGTTATTACTAATGGAGCCAACAATGAGAATAAGAATAATGATGAAGTCCGTGATGCTCCTTCGGTCAAAGCCAATGAGAAACTTAACGTGGCAAATGAAAATCACGGAGGCGACAAGAACGGCGCAAAGAGTTCACCAAGTAGAGCAGAAATCGAGTCATTGCTACCAAAGCTGCATCATGCTGAGTATTTCACAGAGCCTCGGATCCAAGAACTTTCTGCAAAGGAAAGAGCTAATCCTGGTTATACCGGACGGGTGAGGGACTTTGTCGTCGGGAGACACGGTTACGGAAGTATAAGGTTTCTGGGAGAGACGGACGTGCGGAAGCTCGAGTTGGAGAAGTTGGTTCAGTTCAACAACCGAGAAGTGCTTGTGTACATGGACGAGAGCGAGAAACCTCCTGTTGGTCAGGGACTGAACAAGCCAGCGGAAGTAACGTTGCTCAACATAAAATGCATGGACAAGAAGAGCGGCAAGCAAGTGACGGAAGGCCCGAGGGTGGAAAAGTATAAGGAGATGCTCAATAGGAAAGCTGGAGAACAAGGAGCTCAGTTTGTGTCTTATGATGCTGTGAGTGGCGAGTGGAAGTTTAAGGTCGAGCATTTTTAG
Protein:  
MFGASNPFGQGSNSSSPFGTQTQSVFGQNNNNAASNNPFAPKPFGASSPFGAQSGGSMFGGTSTGVFGQNQASSPFGAQTGGSMFGGTSTGVFGQNQASSPFGASSQGFGSSTPSFGAPSAPAFGNSPSPFGGTSTFGQNGFSTPQSSPFGNTTQQSQPAFGNSTFGSSSPFGASTTPTFGSTNTSPFGASSSPAFGAAPTPAFGNSGSAFGNNAFSSPASAFGASSSPAFGVSSSSAFGVGSSPAFGQSMQSSFGAQGSQASTSTFGNQQGGSRVMPYASTIEADAGTNPGKLQSISAMTVHKNKCHEELRWEDYQRGDKGGKLPAGQTSVFSQTPTSPFGQTPANQTNPFQSTIAANPSPFGQTPANQTNPFQSTIAPNPSPFGQTPANQTNPFQSTIAPNPSPFGQPSTNQTNPFQSTIATNPSPFGQPSANQTNTFQSTISPSPFGQPSANPTNTFQSTPNLFSQNTPATNTNFSSPFGQPTAPSLFGTSSNTTSGFGTSSGFATNTTQPFNPSSTPSIASSSAFSQFGSSPSLFSSSPAQGSTPAFSSGNFNNSQSAPLFSSNPSFAQTSSGFTLNTNTQPSIFSTPSTGFPNMSTSSPSFNTSISPFSQTKAVGLTPQQSTQPAQPSISFNNSGQTQATQPSFSFNNSGQTQAGAFQVPAMANPTPTQPNPVASPFGTLPALPQVSIGQGGNSPSIQYGISSLPVVDRPAPARVSPLMTSRHLLQRRVMLPARKYRPGDDSPKVPFFMDEENFNTPKADASFTPRQNPRALFIRSFKKETAAPLKDETTPLQENGKRSNGVITNGANNENKNNDEVRDAPSVKANEKLNVANENHGGDKNGAKSSPSRAEIESLLPKLHHAEYFTEPRIQELSAKERANPGYTGRVRDFVVGRHGYGSIRFLGETDVRKLELEKLVQFNNREVLVYMDESEKPPVGQGLNKPAEVTLLNIKCMDKKSGKQVTEGPRVEKYKEMLNRKAGEQGAQFVSYDAVSGEWKFKVEHF